Cheap flights from Manila to El Nido

One-way fares from $108 · MNL → ENI · prices found by travellers in the last 48 hours

Compare all dates El Nido → Manila
Cheapest fare
$108

Cebu Pacific · Tue, Feb 16

Cheapest month
February

from $108

Direct flights
Not recently

Usually 1+ stop

Quickest trip
2h 10m

410 km

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Cheapest month to fly from Manila to El Nido

Lowest one-way fare per person in each month. Choose a month to see every date.

  1. November 2026 $148
  2. December 2026 $135
  3. January 2027 $124
  4. February 2027 Cheapest $108
  5. March 2027 $108
  6. April 2027 $117
  7. May 2027 $154
  8. October 2027 $142

Cheapest dates in February 2027

The lowest fares we've seen for each day, cheapest first.

Cebu Pacific
Depart14:20 Tue, Feb 16MNL → ENI 2h 25m · 1 stop
$108one way, per person
View deal
Cebu Pacific
Depart23:15 Wed, Feb 17MNL → ENI 3h 25m · 1 stop
$140one way, per person
View deal
Cebu Pacific
Depart23:45 Fri, Feb 19MNL → ENI 3h 25m · 1 stop
$140one way, per person
View deal
Cebu Pacific
Depart23:15 Mon, Feb 8MNL → ENI 3h 25m · 1 stop
$141one way, per person
View deal
Philippines AirAsia
Depart20:35 Thu, Feb 18MNL → ENI 3h 20m · 1 stop
$141one way, per person
View deal
Cebu Pacific
Depart00:00 Mon, Feb 1MNL → ENI 3h 20m · 1 stop
$142one way, per person
View deal
Cebu Pacific
Depart23:15 Sun, Feb 7MNL → ENI 3h 25m · 1 stop
$143one way, per person
View deal
Cebu Pacific
Depart22:50 Tue, Feb 23MNL → ENI 3h 25m · 1 stop
$143one way, per person
View deal
See every date in February 2027 →

Plan the rest of your trip to El Nido

Where to stay, what to do and getting around, from our travel partners.

Where to stay

Hotels in El NidoCompare places to stay on Booking.com Find hotels →

Things to do

Things to do in El NidoTours, attractions and day trips on Klook Explore →

Getting around

Airport transfer in El NidoPre-book a driver to meet you at arrivals, with Kiwitaxi Book a transfer → Car hire in El NidoCompare rental cars from major brands on EconomyBookings Compare cars →

About flights from Manila to El Nido

Manila (MNL) and El Nido (ENI) are about 410 km apart. We haven't seen direct fares on this route recently, so expect at least one stop; the quickest journey we've seen takes about 2h 10m. Over the next few months, one-way fares start from $108, and February 2027 is currently the cheapest month to fly.

These prices come from searches travellers made in the last 48 hours, so they move quickly. If you see a good fare, it's worth booking soon. FlightsExp is free to use: you book directly with our travel partner.

Frequently asked questions

How much is a flight from Manila to El Nido?

The cheapest one-way fare we've seen recently is $108 with Cebu Pacific, departing Tuesday, February 16, 2027. Over the coming months, the lowest fare in each month ranges from $108 to $154.

What is the cheapest month to fly from Manila to El Nido?

February 2027 currently has the lowest fares, from $108 one way.

Are there direct flights from Manila to El Nido?

We haven't seen direct fares recently, so most journeys include at least one stop.

How long is the flight from Manila to El Nido?

The quickest journey we've seen takes about 2h 10m. Manila and El Nido are around 410 km apart.

Which airlines fly from Manila to El Nido?

Recent fares on this route were with Philippines AirAsia and Cebu Pacific.

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